Qlucore Omics Explorer Training Course - 241210

Qlucore Omics Explorer is an interactive, fast and easy to use tool that allows biologists and research scientists to visualize, analyse and perform biological exploration on a wide number of different data types including gene expression data (RNA-seq, count matrix etc), proteomics data, methylation data, qPCR data, assay data (like Olink) and other types of multi-variate data. 

Topics that are going to be addressed 

• The Qlucore Basic training course will give an introduction on how you can explore and analyse experiment data in a number of hands-on exercises: 
• Import and explore a gene expression dataset, visualize in 3D PCA plot and heatmap 
• Do statistical analysis to find discriminating variables  
• Eliminate influence of covariates (like batch effects)  
• Filtering on already calculated p/q and fold change values from bioinformaticians 
• Import and analyze qPCR data, visualize results in bar and violin plots 
• Explore a dataset using UMAP and t-SNE to find interesting groups 
• Pathway analysis using GSEA (Gene Set Enrichment analysis) 
• Biomarker Workbench 
• Keep track of analysis – log and retrieve your analysis  

What NOT to expect 

• No R - coding will be taught.    

Agenda: 

09:30 Introduction 
09:45 Hands on exercises 1-6 
11:00 Break  
11:15 Hands on exercises 7-9  
12:00 Demo Exercises GSEA and Biomarker workbench 
12:00 Precision & Companion Diagnostic Software 
             AI-based machine learning classifiers using full transcriptome 
12.30 End 

Instructor: Anders Johansson 

Date: 10th of December 2024 (9:30-12:30h)

Location: Bioinformatics room (CRG Training Centre) 

Maximum number of participants: 18

Registration deadline: 21th November 2024

Registration HERE

Course flyer HERE

For any information, please send an email to CRG Training and Academic office (TAO): training@crg.eu