Basic Linux & CRG Cluster Course
05/11/2018 to 06/11/2018
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Basic Linux & CRG Cluster Course
BASIC LINUX COURSE
Date: 05/11/2018
Hour: 10am-1pm
Location: Training Center (PRBB Patio) - Bioinformatics room
Trainer: Rodny Hernandez (SIT)
Description: This course is suitable for beginners and explains the basics of GNU/Linux commands and scripts creation. In particular it encompasses the following key concepts:
- Introduction (Linux OS and distributions)
- User accounts
- Secure shell (access to remote servers)
- Man pagesWorking with files and directories (Linux file tree)
- Basic Linux commands: (ls, cp, mkdir, rm, mv, find, man, grep, cut, sort...)
- Files permissions (groups, files, chown, chmod)
- Pipes and redirections
- Editor (gedit) Script creation (conditional structures, loops)
CRG CLUSTER USAGE COURSE
Date: 06/11/2018
Hour: 10am-1pm
Location: Training Center (PRBB Patio) - Bioinformatics room
Trainer: Luis Exposito (SIT)
Description: The course it's an introduction to the CRG's computing cluster usage and encompass the following key concepts:
- Univa Grid Engine Introduction
- Cluster concepts (jobs, queues, nodes, slots, memory)
- Cluster information (qstat, qhost)
- Submitting jobs to the cluster (qsub CLI)
- Managing submitted jobs (qstat, qhold, qdel)
- Submit script requesting basic parameters (memory, number of slots)
- Intermediate data and output management (-e, -o and scratch usage for improving jobs performance)
- Job arrays
Registration deadline by 30th October 2018 - HERE